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SRX23373577: DNA-Seq of Mycoplasma hominis MHOH34 strain
1 DNBSEQ (DNBSEQ-G400) run: 1.5M spots, 334.6M bases, 189.4Mb downloads

Design: Genomic DNA extraction was performed using the Invitrogen PureLink Genomic Mini Kit according to the manufacturer's instructions. To prepare DNA libraries for sequencing, MGIEasy Universal DNA Library Prep Set and the User Manual protocol (Cat. No.: 1000006985, 1000006986, 1000017571. Set Version: V1.0. Manual Version: A3), which includes the following steps of DNA fragmentation, selection of DNA fragments by length, end repair and A-tailing, adapter ligation, post-ligation purification, PCR, post-PCR library purification, denaturation, single-strand circularization and product purification, were used (https://en.mgi-tech.com/products/reagents_info/8/). To perform sequencing from ready-made DNA libraries, protocol DNBSEQ-G400RS High-throughput Rapid Sequencing Set User Manual A2 was used.
Submitted by: Research Institute of Physico-Chemical Medicine
Study: Sequencing of clinical isolates and reference strain of H-34 Mycoplasma hominis to study phenotypic adaptation
show Abstracthide Abstract
Mycoplasma hominis (M. hominis) belongs to the class Mollicutes, characterized by a very small genome size, metabolic pathway reduction, including transcription factors, and the absence of a cell wall. Despite this, they adapt well not only to specific niches within the host organism but can also spread throughout the body, colonizing various organs and tissues. The mechanisms of adaptation in M. hominis, as well as the pathways regulating them, are poorly understood. It is known that when adapting to adverse conditions, mycoplasmas can undergo phenotypic switches that may persist for several generations. To investigate the adaptive properties of M. hominis associated with survival in the host organism, we conducted a comparative genomic analysis of 8 clinical isolates of M. hominis obtained from patients with urogenital infections, along with the laboratory strain H-34.
Sample:
SAMN39556160 • SRS20235707 • All experiments • All runs
Library:
Name: MHOH34
Instrument: DNBSEQ-G400
Strategy: WGS
Source: GENOMIC
Selection: size fractionation
Layout: PAIRED
Runs: 1 run, 1.5M spots, 334.6M bases, 189.4Mb
Run# of Spots# of BasesSizePublished
SRR277067681,521,082334.6M189.4Mb2024-07-17

ID:
31593150

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